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Installation
Usage

Tutorials

scBIOT
1. scRNA-seq
- a. Lung atlas benchmarking
2. scRNA-seq in R (Seurat + reticulate)
3. snATAC-seq
4. Paired Multiomics
- Setup
- Setup
5. Unpaired Multiomics Integration
6. Centroid-Level Optimal Transport
- a. Lung atlas benchmark
- b. Tahoe-100M scaling
7. brain_1.3M_integration
8. Label transfer with supBIOT

API reference

API
- scbiot.ot.integrate_ot
- scbiot.ot.supbiot
Optimal transport: ot
Preprocessing: pp
Plotting: pl
Data source: inputs

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.rst

1. scRNA-seq

1. scRNA-seq#

Walkthroughs for single-cell RNA-seq integration with scBIOT.

a. Lung atlas benchmarking

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https://scib-metrics.readthedocs.io/en/latest/notebooks/lung_example.html

By Haihui Zhang

© Copyright 2026, Haihui Zhang.